Datasets:

Patch Size

#16
by 7monaw - opened

Hello authors, I see that in the dataset description, the patch size is 256x256 px (" 256x256 H&E patches (0.5µm/px) extracted around ST spots in a .h5 object optimized for deep-learning."). However, the paper says "From the tissue segmentation, we extracted 224×224-pixel patches at 20× magnification around each spot". The paper also mentioned that 256x256 patches can be used to extract general purpose embedding. I also noted that the dataset contains 224x224 px, so I want to know if 256x256 px was a typo or is there a differentiation? Thanks.

AI for Pathology Image Analysis Lab @ HMS / BWH org
edited 16 days ago

Hello @7monaw , apologies for the late response. Thanks for pointing out this typo, the patches are indeed 224x224 px, please see: this thread

pauldoucet changed discussion status to closed

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