| # Medical-Commons | |
| <!-- Provide a quick summary of the dataset. --> | |
| Medical-Commons is the largest dataset of medical content under free licenses or open data program collected by Pleias. | |
| It includes three different collection: | |
| * International scientific collection of 2M articles from OpenAlex. | |
| * French scientific collection of XM articles, reports and PhD theses from French institutional repositories. | |
| * Administration collection from health and medical agencies, for now limited to France but with a planned Europe-wide expansion. | |
| The repositories give access to the complete available metadata as well as a sample of ressources. | |
| # OpenAlex Collection Statistics | |
| ## Overview | |
| This section presents detailed statistics **for the OpenAlex collection** within the Medical-Commons dataset. This international scientific collection represents just one of the three collections in Medical-Commons, containing 2.6 million medical articles under free licenses or open data programs. | |
| ## OpenAlex Collection Statistics | |
| | Metric | Value (OpenAlex Collection Only) | | |
| |--------|----------------------------------| | |
| | Total Papers | 2,623,673 | | |
| | Total Words | 21,328,187,404 | | |
| | Average Words per Paper | 8,129.1 | | |
| ## Top 10 Medical Subfields in OpenAlex Collection | |
| | Subfield | Papers in OpenAlex | % of OpenAlex Total | Words in OpenAlex | Avg Words per Paper | | |
| |----------|-------------------|---------------------|-------------------|---------------------| | |
| | Epidemiology | 239,307 | 9.12% | 2,104,074,798 | 8,792.5 | | |
| | Public Health, Environmental and Occupational Health | 237,052 | 9.04% | 1,993,696,484 | 8,410.0 | | |
| | Surgery | 218,569 | 8.33% | 1,562,899,038 | 7,150.0 | | |
| | Pulmonary and Respiratory Medicine | 188,053 | 7.17% | 1,485,806,299 | 7,901.0 | | |
| | Oncology | 186,583 | 7.11% | 1,355,465,028 | 7,265.0 | | |
| | Infectious Diseases | 162,401 | 6.19% | 1,362,069,806 | 8,386.5 | | |
| | Physiology | 147,703 | 5.63% | 1,308,562,705 | 8,859.4 | | |
| | Cardiology and Cardiovascular Medicine | 112,962 | 4.31% | 969,602,006 | 8,583.4 | | |
| | Radiology, Nuclear Medicine and Imaging | 105,846 | 4.03% | 928,390,321 | 8,771.1 | | |
| | Pediatrics, Perinatology and Child Health | 102,518 | 3.91% | 764,365,895 | 7,455.9 | | |
| ## OpenAlex Collection Distribution Visualization | |
| <img src="./openalex_stats.png" width="600" alt="OpenAlex Subfields Distribution"> | |
| # Health French Open Administrative Data | |
| This is a collection of diverse health and medical related documents (mostly PDFs and webpages, but also some docx, xml, etc) that come from French gouvernment public websites. | |
| | Catégorie | Documents | Mots | Largest Contributor | | |
| |-----------|-----------|------|-------------------------| | |
| | Sécurité Sociale et Soutien | 183 370 | 98 154 084 | forum-assures.ameli.fr | | |
| | Services d'Information sur les Addictions | 113 140 | 48 008 481 | alcool-info-service.fr | | |
| | Institutions et Agences Médicales | 100 760 | 189 827 776 | ansm.sante.fr | | |
| | Sujets de Santé Spécialisés | 91 186 | 122 716 315 | e-cancer.fr | | |
| | Portails Gouvernementaux de Santé | 62 026 | 250 630 040 | sante.gouv.fr | | |
| | **Total** | **550 482** | **709 336 696** | - | | |
| <img src="./documents.png" width="800" alt="% by number of documents"> | |
| <img src="./mots.png" width="800" alt="% by number of words"> | |
| A sample of the PDFs that can be found in this collection is present in the haut_conseil_sante_publique folder. | |
| # French Health PhD Thesis/Specialized publications | |
| This collection contains a total of **383 622** publicly available French thesis and specialized articles in health and medicine, coming from public repositories like HAL, theses.fr, and others. | |
| We can find in the top 10 laboratories and instituions the following: | |
| - Institut de Recherche Interdisciplinaire de Grenoble [Grenoble] | |
| - Bordeaux Population Health [Bordeaux] | |
| - Unité Mixte de Recherche sur les Herbivores - UMR 1213 [Clermont-Ferrand] | |
| - Physiologie & Médecine Expérimentale du Cœur et des Muscles [U 1046] [Montpellier] | |
| - Institut de Recherche en Santé, Environnement et Travail [Rennes] | |
| - Physiologie, Environnement et Génétique pour l'Animal et les Systèmes d'Élevage [Rennes] | |
| - Génétique Physiologie et Systèmes d'Élevage [Toulouse] | |
| - Science et Technologie du Lait et de l'Œuf [Rennes] | |
| - Centre de Recherche en Épidémiologie et Santé des Populations [Paris] | |
| - Centre de Recherche des Cordeliers [Paris] |