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metadata
dataset_info:
  features:
    - name: A
      dtype: string
    - name: B
      dtype: string
    - name: SeqA
      dtype: string
    - name: SeqB
      dtype: string
    - name: OrgA
      dtype: string
    - name: OrgB
      dtype: string
  splits:
    - name: train
      num_bytes: 712286721
      num_examples: 497083
  download_size: 285135762
  dataset_size: 712286721
configs:
  - config_name: default
    data_files:
      - split: train
        path: data/train-*

BIOGRID release 4.4.243 (Feb 2025)

BIOGRID can be downloaded here. SwissProt and Trembl IDs are matched to sequences with this tool. For each interaction pair we keep examples where A and B both have a mapped sequence. We use the SwissProt IDs preferentially if there are multiple for the same entity.

This dataset is the Multi-Validated (MV) version of BIOGRID. The selection criteria is summarized in the image below.

image/png

Citation

If you use this dataset please cite their work:

@article{Oughtred2020,
  title = {The <scp>BioGRID</scp> database: A comprehensive biomedical resource of curated protein,  genetic,  and chemical interactions},
  volume = {30},
  ISSN = {1469-896X},
  url = {http://dx.doi.org/10.1002/pro.3978},
  DOI = {10.1002/pro.3978},
  number = {1},
  journal = {Protein Science},
  publisher = {Wiley},
  author = {Oughtred,  Rose and Rust,  Jennifer and Chang,  Christie and Breitkreutz,  Bobby‐Joe and Stark,  Chris and Willems,  Andrew and Boucher,  Lorrie and Leung,  Genie and Kolas,  Nadine and Zhang,  Frederick and Dolma,  Sonam and Coulombe‐Huntington,  Jasmin and Chatr‐aryamontri,  Andrew and Dolinski,  Kara and Tyers,  Mike},
  year = {2020},
  month = nov,
  pages = {187–200}
}