PMC-OA-Beta Dataset

News: We are about to release the PMC-OA dataset, there would be a link redirecting you to PMC-OA as soon as it's ready.

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PMC-OA Dataset
- Daraset Structure
- Sample

Daraset Structure

PMC-OA (seperated images, separated caption).

train.jsonl: metafile of train set
valid.jsonl: metafile of valid set
test.jsonl: metafile of test set
images.zip: images folder

PMC-OA Beta is dataset of (seperated images, whole caption). And it's structure is the same as PMC-OA.

Sample

A row in train.jsonl is shown bellow,

{
    "image": "PMC212319_Fig3_4.jpg",
    "caption": "A. Real time image of the translocation of ARF1-GFP to the plasma membrane ...",
    "pmcid": "PMC212319",
    "url_name": "1471-2121-4-13-3.jpg"
}

Explanation to each key

image: path to the image
caption: corresponding to the image
pmcid: source paper's PMCID of the image
url_name: image name in the web link