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Datasets:
bio-nlp-umass
/
Synth-SBDH

Tasks:
Text Classification
Token Classification
Languages:
English
Size:
1K<n<10K
Tags:
me
croissant
Libraries:
License:
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xet
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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 1 new columns ({'Operation'})

This happened while the csv dataset builder was generating data using

hf://datasets/bio-nlp-umass/Synth-SBDH/synth_sbdh_test_reviewed.csv (at revision 52ff58c8a652ebde6c26d3af94ca067d3d397272)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 644, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              ex_no: int64
              Text: string
              Textspan: string
              Reasoning: string
              SBDH: string
              Presence: string
              Period: string
              Operation: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1165
              to
              {'ex_no': Value('int64'), 'Text': Value('string'), 'Textspan': Value('string'), 'SBDH': Value('string'), 'Presence': Value('string'), 'Period': Value('string'), 'Reasoning': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1456, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1055, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 894, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 970, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 1 new columns ({'Operation'})
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/bio-nlp-umass/Synth-SBDH/synth_sbdh_test_reviewed.csv (at revision 52ff58c8a652ebde6c26d3af94ca067d3d397272)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

ex_no
int64
Text
string
Textspan
string
SBDH
string
Presence
string
Period
string
Reasoning
string
0
He has suffered from chronic pain for several years now, but is not addicted to pain medications.
suffered from chronic pain || not addicted to pain medications
pain || substance abuse
yes || no
current || current
The patient is suffering from chronic pain. || The patient is not addicted to pain medications, indicating the absence of substance abuse.
1
Patient feels undervalued at work; fears losing job due to company downsizing.
fears losing job
job insecurity
yes
current
The patient expresses fear of job loss, indicating job insecurity.
2
Patient is worried about losing his job due to frequent hospital visits.
worried about losing his job
job insecurity
yes
current
Patient expresses fear of job loss due to health issues.
3
The patient was attacked by a stranger on her way home from work.
attacked by a stranger
violence
yes
current
The patient has been a victim of violence.
4
He's been skipping meals to save up for his kid's tuition.
skipping meals || save up for his kid's tuition
food insecurity || financial insecurity
yes || yes
current || current
Skipping meals can be a sign of food insecurity. || Saving up for a child's tuition can indicate financial insecurity.
5
Patient is a veteran and reports experiencing flashbacks and nightmares related to combat.
experiencing flashbacks and nightmares related to combat
psychiatric symptoms or disorders
yes
current
Flashbacks and nightmares related to combat are indicators of psychiatric symptoms.
6
Patient's medical history reveals past episodes of severe depression.
past episodes of severe depression
psychiatric symptoms or disorders
yes
history
Past episodes of depression indicates a history of psychiatric disorders.
7
Patient is showing extreme worry about the upcoming surgery and the associated medical bills.
extreme worry || associated medical bills
psychiatric symptoms or disorders || financial insecurity
yes || yes
current || current
Excessive worry can be a sign of psychiatric issues. || Worry about medical bills could indicate financial insecurity.
8
She reported episodes of severe depression since her mother's passing.
episodes of severe depression
psychiatric symptoms or disorders
yes
current
Episodes of severe depression can be categorized as psychiatric symptoms or disorders.
9
Patient has been arrested recently for a DUI and is awaiting court proceedings.
arrested recently for a DUI || awaiting court proceedings
legal problems || legal problems
yes || yes
current || current
The patient was arrested for a DUI, indicating a legal problem. || The patient is awaiting court proceedings, indicating ongoing legal issues.
10
The patient expressed concerns about her work performance due to stress, anxious about potentially losing her job.
anxious about potentially losing her job || stress
job insecurity || psychiatric symptoms or disorders
yes || yes
current || current
Fear of losing a job indicates job insecurity. || Stress can be a psychiatric symptom.
11
Patient’s financial status is stable, and they report no difficulty in meeting monthly expenses.
financial status is stable
financial insecurity
no
current
A stable financial status indicates the absence of financial insecurity.
12
Patient relies on her children for communication with healthcare providers.
relies on her children for communication
barriers to care
yes
current
Relying on others for communication indicates barriers to care.
13
The patient is suffering from severe depression and has thoughts of suicide.
suffering from severe depression
psychiatric symptoms or disorders
yes
current
The mention of severe depression is indicative of psychiatric symptoms or disorders.
14
Patient reported he is unable to pay his utility bills and his kids are going to school hungry.
unable to pay his utility bills || kids are going to school hungry
financial insecurity || food insecurity
yes || yes
current || current
The patient is currently unable to pay his bills which is an indicator of financial insecurity. || The patient's children are going to school hungry which is an indicator of food insecurity.
15
He is actively looking for a job to support his family.
actively looking for a job
job insecurity
yes
current
Looking for a job indicates job insecurity.
16
Patient has been struggling to pay off her student loans, causing significant stress and financial anxiety.
struggling to pay off her student loans
financial insecurity
yes
current
Struggling to pay off loans showcases financial insecurity.
17
Child protective services were involved due to concerns of domestic violence.
concerns of domestic violence
violence
yes
current
Mention of domestic violence signals an issue of violence.
18
Patient is a smoker and has been advised to quit multiple times by his physician.
smoker
substance abuse
yes
current
Being a smoker indicates substance abuse.
19
Patient has struggled with drug addiction for several years.
struggled with drug addiction
substance abuse
yes
history
Struggle with drug addiction indicates substance abuse.
20
Veteran revealed that he was a victim of physical abuse during his childhood.
victim of physical abuse
violence
yes
history
Being a victim of physical abuse indicates violence.
21
Patient fears he will lose his house as he could not pay his mortgage for the past 2 months.
fears he will lose his house || could not pay his mortgage
financial insecurity || housing insecurity
yes || yes
current || current
Fear of losing a house indicates financial insecurity. || Inability to pay mortgage indicates housing insecurity.
22
Patient reported severe back pain for the past week, and it's impacting his ability to work.
severe back pain || impacting his ability to work
pain || job insecurity
yes || yes
current || current
Reporting severe pain indicates the presence of pain. || Severe pain disrupting work life signifies a potential job insecurity.
23
Patient has chronic pain due to rheumatoid arthritis, and often feels anxious about future health deterioration.
chronic pain due to rheumatoid arthritis || often feels anxious about future health deterioration
pain || psychiatric symptoms or disorders
yes || yes
current || current
The patient is experiencing chronic pain due to rheumatoid arthritis. || The patient's worry about future health deterioration is a sign of psychiatric symptoms.
24
Patient reported that she has been having severe migraines and back pain for the past few weeks.
severe migraines and back pain
pain
yes
current
Mention of severe and ongoing migraines and back pain suggests the presence of pain.
25
She discloses experiencing frequent headaches and has been struggling with job stability.
frequent headaches || struggling with job stability
pain || job insecurity
yes || yes
current || current
Patient is experiencing frequent headaches, indicating pain. || Patient is struggling with job stability, indicating job insecurity.
26
Patient had an acute episode of severe chest pain last night.
acute episode of severe chest pain
pain
yes
current
This suggests the presence of acute pain.
27
Patient is struggling to afford meals and sometimes goes to sleep hungry.
struggling to afford meals
food insecurity
yes
current
Patient is struggling for meals which indicates food insecurity.
28
The veteran has been suffering from chronic back pain for the past two months.
chronic back pain
pain
yes
current
The veteran has been dealing with chronic pain.
29
Patient has been wheelchair bound since the accident and suffers from chronic back pain.
wheelchair bound || chronic back pain
patient disability || pain
yes || yes
current || current
Being wheelchair bound interferes with daily life activities, indicating a physical disability. || Chronic back pain is a persistent physical discomfort.
30
Patient has lost his job due to physical disabilities and is currently living on government financial aid.
lost his job || living on government financial aid
job insecurity || financial insecurity
yes || yes
current || current
The patient lost his job due to physical issues and this refers to job insecurity. || Reliance on government financial aid signifies financial insecurity.
31
Patient was assaulted last year and suffers from PTSD.
assaulted || suffers from PTSD
violence || psychiatric symptoms or disorders
yes || yes
history || current
Being assaulted is a form of violence. || PTSD is a psychiatric disorder.
32
Patient has been confined to his home due to recent surgery, leading to physical isolation.
confined to his home due to recent surgery
physical isolation
yes
current
Confinement to home following surgery results in physical isolation.
33
The veteran's wife recently passed away, and he has started drinking heavily to cope with the loss.
wife recently passed away || started drinking heavily
loss of relationship || substance abuse
yes || yes
current || current
The death of a spouse is considered a loss of relationship. || Heavy drinking indicates substance abuse.
34
The veteran is struggling with disturbing memories of violent experiences during his deployment.
disturbing memories || violent experiences
psychiatric symptoms or disorders || violence
yes || yes
current || history
The patient has disturbing memories of violent experiences which are psychiatric symptoms. || The patient witnessed violent incidents during his military service.
35
Patient lives alone and has no relatives in the city.
lives alone and has no relatives in the city
social isolation
yes
current
Living alone with no family nearby suggests social isolation.
36
Patient's wheelchair was recently replaced. She reports that she used to struggle with moving around her home.
Patient's wheelchair was recently replaced
patient disability
yes
current
Patient's wheelchair replacement indicates patient disability.
37
Patient reports of being abused by her partner.
being abused by her partner
violence
yes
current
The patient is a victim of domestic violence.
38
Patient states that she has been feeling lonely ever since she moved to a new city for work.
feeling lonely
social isolation
yes
current
Patient is feeling socially isolated after moving to a new city.
39
Patient lives in a shared apartment and frequently complains about loud noises and disturbances from the neighboring units.
shared apartment || loud noises and disturbances
housing insecurity || psychiatric symptoms or disorders
yes || yes
current || current
Living in a shared apartment can indicate housing insecurity due to potential issues with roommates or neighbors. || Loud noises and disturbances from neighbors can lead to stress and affect mental health, indicating a psychiatric symptom.
40
Patient has a history of legal problems, including a recent arrest for shoplifting.
history of legal problems || recent arrest for shoplifting
legal problems || legal problems
yes || yes
history || current
A history of legal problems suggests past legal problems. || A recent arrest for shoplifting indicates current legal problems.
41
Patient has depression and has been isolating themselves from family and friends.
depression || isolating themselves from family and friends
psychiatric symptoms or disorders || social isolation
yes || yes
current || current
Depression is a psychiatric symptom. || Isolation from social circles is a sign of social isolation.
42
Patient's mother died last week, he now feels alone and depressed.
mother died last week
loss of relationship
yes
current
Loss of mother led to a major emotional event.
43
He is dealing with the death of his wife and is in grief.
death of his wife
loss of relationship
yes
current
Loss of a loved one indicates loss of relationship.
44
The elderly patient lives alone in a remote area and often forgets to take his medications.
lives alone || forgets to take his medications
physical isolation || barriers to care
yes || yes
current || current
The patient lives alone and is physically isolated. || The patient has trouble remembering to take his medications, indicating a barrier to care.
45
During hospital stay, patient expressed fear of being unable to afford medications after discharge.
fear of being unable to afford medications
financial insecurity
yes
current
Fear of being unable to afford medications indicates financial insecurity.
46
After being laid off, he was unable to find a job and now suffers from chronic anxiety and depression.
being laid off || chronic anxiety and depression
job insecurity || psychiatric symptoms or disorders
yes || yes
history || current
The patient was dismissed from his job, indicating job insecurity. || The patient has ongoing anxiety and depression, indicating psychiatric symptoms or disorders.
47
Patient reports consistent headaches for the past week.
consistent headaches
pain
yes
current
Patient is experiencing frequent headaches, which is a form of pain.
48
Patient has been feeling lonely since his wife passed away.
feeling lonely || wife passed away
social isolation || loss of relationship
yes || yes
current || history
Patient expresses feeling of loneliness indicating social isolation. || Loss of spouse indicates loss of relationship.
49
Patient reported he has quit smoking, but still drinks alcohol occasionally.
drinks alcohol occasionally
substance abuse
yes
current
Occasional alcohol consumption suggests possible substance abuse.
50
Veteran is living in a shelter due to homelessness. He seems depressed and withdrawn.
living in a shelter due to homelessness || seems depressed and withdrawn
housing insecurity || psychiatric symptoms or disorders
yes || yes
current || current
Living in a shelter indicates housing insecurity. || Depression and withdrawal are psychiatric symptoms.
51
Patient mentions financial difficulties due to loss of job.
financial difficulties || loss of job
financial insecurity || job insecurity
yes || yes
current || current
Patient mentions financial difficulties, suggesting financial insecurity. || Loss of job is an indicator of job insecurity.
52
Her family is struggling with food due to financial issues.
struggling with food || financial issues
food insecurity || financial insecurity
yes || yes
current || current
Struggling to secure food for the family is a sign of food insecurity. || Financial issues cause anxiety and exposure to adverse economic events.
53
Patient is currently unemployed and experiencing difficulty in finding a new job.
currently unemployed || difficulty in finding a new job
job insecurity || job insecurity
yes || yes
current || current
The patient is not currently employed indicating job insecurity. || The patient is actively seeking but unable to find work, indicating ongoing job insecurity.
54
The patient's home was recently foreclosed, forcing them to live in a shelter.
home was recently foreclosed
housing insecurity
yes
current
Foreclosure indicates housing insecurity.
55
Patient having difficulty in communicating with the new healthcare provider.
difficulty in communicating with the new healthcare provider
transitions of care
yes
current
The patient is struggling to communicate with a new healthcare provider, indicating a transition of care.
56
The patient has been having thoughts of self-harm.
thoughts of self-harm
psychiatric symptoms or disorders
yes
current
Thoughts of self-harm indicate psychiatric symptoms or disorders.
57
John has just been diagnosed with arthritis which causes him persistent pain.
diagnosed with arthritis
pain
yes
current
Arthritis is a chronic condition that can cause pain.
58
Patient mentions feeling continuously anxious about her financial situation, especially unpaid bills.
anxious about her financial situation || unpaid bills
financial insecurity || financial insecurity
yes || yes
current || current
Continual anxiety about financial situation indicates financial insecurity. || Unpaid bills are a sign of financial insecurity.
59
She is struggling financially, relying on food banks for meals.
struggling financially || relying on food banks for meals
financial insecurity || food insecurity
yes || yes
current || current
Financial struggle is indicative of financial insecurity. || Relying on food banks indicates a lack of access to healthy food at home.
60
Patient states that he rarely interacts with his children or grandchildren due to his physical disability.
rarely interacts with his children or grandchildren || his physical disability
social isolation || patient disability
yes || yes
current || current
This indicates that the patient is experiencing social isolation. || This signifies that the patient has a disability affecting his daily life.
61
Patient is often alone and reports feeling lonely most of the time.
alone and reports feeling lonely
social isolation
yes
current
Being alone and feeling lonely frequently indicates social isolation.
62
She was recently released from prison and has been finding it difficult to find a job.
recently released from prison || finding it difficult to find a job
legal problems || job insecurity
yes || yes
history || current
The patient's recent release from prison indicates a previous legal issue. || The patient's difficulty in securing employment suggests job insecurity.
63
The patient uses a wheelchair for mobility and is having trouble affording his medications.
uses a wheelchair for mobility || having trouble affording his medications
patient disability || financial insecurity
yes || yes
current || current
Using a wheelchair indicates patient disability. || Trouble affording medications is a sign of financial insecurity.
64
Patient is suffering from anxiety due to financial stress and is unable to afford medications.
anxiety || financial stress || unable to afford medications
psychiatric symptoms or disorders || financial insecurity || barriers to care
yes || yes || yes
current || current || current
Anxiety is a psychiatric symptom. || Financial stress indicates financial insecurity. || Inability to afford medications indicates a barrier to care.
65
Patient has limited mobility and uses a wheelchair for movement.
uses a wheelchair
patient disability
yes
current
The use of a wheelchair indicates a physical disability.
66
James is living alone and is unable to afford groceries regularly which is leading to malnutrition.
living alone || unable to afford groceries
social isolation || food insecurity
yes || yes
current || current
Living alone suggests social isolation. || Inability to afford groceries indicates food insecurity.
67
He does not have reliable transportation for his medical appointments.
does not have reliable transportation
barriers to care
yes
current
Patient lacks reliable transportation, which can hinder access to healthcare.
68
Patient expresses concerns about affording nutritious food and his lack of appetite.
concerns about affording nutritious food
food insecurity
yes
current
Concerns about affording nutritious food signify food insecurity.
69
Patient reports she does not have stable housing arrangements and often sleeps on friends' couches.
does not have stable housing arrangements
housing insecurity
yes
current
Lack of stable housing arrangements is indicative of housing insecurity.
70
Patient stated he is facing eviction from his apartment and fears he may become homeless.
facing eviction
housing insecurity
yes
current
Facing eviction is indicative of housing insecurity.
71
Patient has just moved into a rehabilitation facility due to a stroke.
moved into a rehabilitation facility || due to a stroke
housing insecurity || patient disability
yes || yes
current || current
The patient has had to change their place of living due to health reasons, indicating housing insecurity. || The stroke suggests the patient has a disability.
72
Patient suffers from severe back pain and has trouble moving without assistance.
severe back pain || trouble moving without assistance
pain || patient disability
yes || yes
current || current
Severe back pain indicates the presence of acute or chronic pain. || Difficulty in moving without help suggests the patient has a disability.
73
Patient often experiences nightmares about her abusive ex-partner.
experiences nightmares about her abusive ex-partner
violence
yes
history
Nightmares about an abusive ex-partner suggests a history of violence.
74
John, a military veteran, uses a wheelchair following an injury in combat.
uses a wheelchair || injury in combat
patient disability || violence
yes || yes
current || history
The patient requires assistive devices, indicating disability. || The patient was injured in a violent situation.
75
Veteran is suffering from PTSD due to exposure to combat during his military service.
suffering from PTSD || exposure to combat
psychiatric symptoms or disorders || violence
yes || yes
current || history
This is a clear sign of a psychiatric disorder. || Exposure to combat is an instance of experiencing violence.
76
Veteran has been living in a shelter for the last six months due to financial constraints.
living in a shelter || financial constraints
housing insecurity || financial insecurity
yes || yes
current || current
Living in a shelter indicates housing insecurity. || Financial constraints indicate financial insecurity.
77
Patient's criminal history includes arrest for assault.
criminal history || arrest for assault
legal problems || violence
yes || yes
history || history
The patient's past involvement in criminal activities represents a legal issue. || Assault is a violent crime, indicating a history of violence.
78
The patient, recently laid off, expressed worry about her family's food situation.
recently laid off || worry about her family's food situation
job insecurity || food insecurity
yes || yes
current || current
Patient has been laid off recently, indicating job insecurity. || Patient is worried about her family's food situation, indicating food insecurity.
79
Patient is a long time smoker but has successfully quit drinking alcohol for a year.
long time smoker || quit drinking alcohol for a year
substance abuse || substance abuse
yes || no
current || history
Long term smoking is indicative of substance abuse. || Quitting alcohol indicates a history of substance abuse.
80
She is wheelchair-bound and requires constant assistance.
wheelchair-bound
patient disability
yes
current
Use of a wheelchair indicates a physical disability.
81
He cannot afford his medications and has been skipping doses.
cannot afford his medications || skipping doses
financial insecurity || barriers to care
yes || yes
current || current
The patient is experiencing financial insecurity as he cannot afford necessary medications. || Skipping doses due to financial constraints is indicative of barriers to receiving proper care.
82
He is a regular smoker with a history of alcohol abuse, now undergoing treatment.
regular smoker || history of alcohol abuse || undergoing treatment
substance abuse || substance abuse || transitions of care
yes || yes || yes
current || history || current
Patient smokes regularly which is a form of substance abuse. || Patient has a history of abusing alcohol, categorized as substance abuse. || Patient is currently involved in treatment, indicating a transitional point in care.
83
Patient lives alone and does not engage in any social activities since his wife passed away.
lives alone || does not engage in any social activities || wife passed away
social isolation || social isolation || loss of relationship
yes || yes || yes
current || current || history
Living alone may result in social isolation for the patient. || Lack of social engagement indicates social isolation. || The death of his wife is a loss of a personal relationship.
84
Patient has recently been dealing with a lot of pain due to arthritis.
dealing with a lot of pain
pain
yes
current
The patient is dealing with arthritis pain which is affecting their quality of life.
85
Patient expressed fear of job loss due to company downsizing, and is experiencing stress-related physical symptoms.
fear of job loss due to company downsizing || stress-related physical symptoms
job insecurity || psychiatric symptoms or disorders
yes || yes
current || current
Fear of job loss due to company downsizing indicates job insecurity. || Stress-related physical symptoms are indicative of a stress disorder, which falls under psychiatric symptoms or disorders.
86
The child has been removed from the home due to reports of abuse.
reports of abuse
violence
yes
current
Reports of abuse indicate the presence of violence in the home.
87
Ever since her divorce last year, the patient has been living alone and reports feelings of loneliness.
divorce
loss of relationship
yes
history
Divorce is a significant life event that often results in a loss of relationships.
88
Patient recently moved to a new city and feels isolated due to lack of social connections.
feels isolated
social isolation
yes
current
The patient feels isolated, indicating social isolation.
89
The patient has recently been discharged from the hospital but lacks proper home care, causing concerns about her health.
recently been discharged from the hospital || lacks proper home care
transitions of care || barriers to care
yes || yes
current || current
Recent hospital discharge is a transition of care. || Lack of home care after hospital discharge indicates barriers to care.
90
The patient is currently unemployed and applying for food stamps.
currently unemployed || applying for food stamps
job insecurity || food insecurity
yes || yes
current || current
Unemployment is an indication of job insecurity. || Applying for food stamps is an indication of food insecurity.
91
Patient has been struggling with depression and anxiety but refuses to take medication.
struggling with depression and anxiety
psychiatric symptoms or disorders
yes
current
Patient is experiencing mental health issues which are psychiatric symptoms.
92
Patient was discharged from the care facility without proper arrangements for follow-up care.
discharged from the care facility without proper arrangements for follow-up care
transitions of care
yes
current
Discharge from a care facility without proper follow-up care arrangements indicates transitions of care.
93
The patient, who is homeless, mentioned that he often goes hungry as he is unable to afford food.
who is homeless || often goes hungry as he is unable to afford food
housing insecurity || food insecurity
yes || yes
current || current
Homelessness is evidence of housing insecurity. || Inability to afford food indicates food insecurity.
94
Patient reports being afraid of going to the hospital due to previous negative experiences with healthcare providers.
afraid of going to the hospital
barriers to care
yes
current
Fear of going to the hospital indicates a barrier to care.
95
Patient reports lack of appetite and weight loss due to financial struggles and inability to afford healthy meals.
inability to afford healthy meals
food insecurity
yes
current
The patient's financial struggles that prevent her from affording healthy meals suggest food insecurity.
96
Patient, who has been abused since childhood, is exhibiting signs of severe depression.
abused since childhood || severe depression
violence || psychiatric symptoms or disorders
yes || yes
history || current
Being abused in childhood is categorized as experiencing violence. || Severe depression is a psychiatric symptom.
97
The patient has a history of financial troubles due to gambling addiction.
financial troubles || gambling addiction
financial insecurity || substance abuse
yes || yes
history || history
Financial troubles indicate financial insecurity. || Gambling addiction is a type of substance abuse.
98
Patient has acute insomnia, which is often exacerbated by her financial worries.
acute insomnia || financial worries
psychiatric symptoms or disorders || financial insecurity
yes || yes
current || current
Insomnia is a psychiatric symptom or disorder. || Financial worries indicate financial insecurity.
99
Patient has been physically abused by the spouse.
physically abused by the spouse
violence
yes
current
Being physically abused by the spouse indicates exposure to violence.
End of preview.

Dataset Card for Synth-SBDH

Synth-SBDH is a collection of 8,767 synthetic examples with annotations for 15 SBDH categories. SBDH annotations include information such as presence, period and annotation rationale.

Dataset Description

Synth-SBDH is a novel synthetic SBDH dataset that mimics EHR notes.

Dataset Structure

Data Instances

Some examples from synth_sbdh_train.csv looks as follows.

{
  'ex_no': 30,
  'Text': 'Patient has lost his job due to physical disabilities and is currently living on government financial aid.',
  'Textspan': 'lost his job || living on government financial aid',
  'SBDH': 'job insecurity || financial insecurity',
  'Presence': 'yes || yes',
  'Period': 'current || current',
  'Reasoning': 'The patient lost his job due to physical issues and this refers to job insecurity. || Reliance on government financial aid signifies financial insecurity.'
}
{
  'ex_no': 31,
  'Text': 'Patient was assaulted last year and suffers from PTSD.',
  'Textspan': 'assaulted || suffers from PTSD',
  'SBDH': 'violence || psychiatric symptoms or disorders',
  'Presence': 'yes || yes',
  'Period': 'history || current',
  'Reasoning': 'Being assaulted is a form of violence. || PTSD is a psychiatric disorder.'
}

Data Fields

We release Synth-SBDH as CSV files. Each CSV file has the following fields:

  • ex_no: Unique identifier for an example.
  • Text: Example text sequence, at max a few sentences long.
  • Textspan: Text spans with mentions of SBDH, separated by '||'.
  • Reasoning: Rationales for SBDH annotations, separated by '||'.
  • SBDH: SBDH annotations for text spans in Textspan, separated by '||'.
  • Presence: Presence annotations (yes/no) for text spans in Textspan, separated by '||'.
  • Period: Period annotations (current/history) for text spans in Textspan, separated by '||'.
  • Operation (only for synth_sbdh_test_reviewed.csv file): One of the four review operation considered by the human experts - keep, correct, discard or add.

Data Splits

The Synth-SBDH dataset has 4 splits: train, val, test, and test_reviewed. Below are the statistics for the dataset.

Dataset Split Number of Examples Number of Annotations
Train 6,136 10,022
Val 876 1,443
Test 1,755 2,904
Test (Expert Reviewed) 1,732 3,345

Dataset Creation

Details about how the data was created are available in our paper.

Uses

You may directly download and use the dataset using the datasets library.

from datasets import load_dataset

synth_sbdh_dataset = load_dataset("bio-nlp-umass/Synth-SBDH")

Or you can also individually download the files and load them using any compatible libray. For example, using pandas -

import pandas as pd

synth_sbdh_df = pd.read_csv('FILE_NAME')

Citation

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