Datasets:
Upload README_0014_learn2reg.md
Browse files
0014_learn2reg/README_0014_learn2reg.md
ADDED
|
@@ -0,0 +1,52 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Learn2Reg – Abdomen MR-CT (TCIA Subset)
|
| 2 |
+
|
| 3 |
+
## License
|
| 4 |
+
Because Learn2Reg sourced images from different datasets and here we only used the TCIA-relevant subset, the license is as follows:
|
| 5 |
+
TCIA (TCGA-KIRC, TCGA-KIRP, TCGA-LIHC): [TCIA Data Usage Policy](https://www.cancerimagingarchive.net/data-usage-policies/) and [Creative Commons Attribution 3.0 Unported License](https://creativecommons.org/licenses/by/3.0/).
|
| 6 |
+
|
| 7 |
+
## Citation
|
| 8 |
+
Paper BibTeX:
|
| 9 |
+
|
| 10 |
+
```bibtex
|
| 11 |
+
@article{hering2022learn2reg,
|
| 12 |
+
title={Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning},
|
| 13 |
+
author={Hering, Alessa and Hansen, Lasse and Mok, Tony CW and Chung, Albert CS and Siebert, Hanna and H{\"a}ger, Stephanie and Lange, Annkristin and Kuckertz, Sven and Heldmann, Stefan and Shao, Wei and others},
|
| 14 |
+
journal={IEEE Transactions on Medical Imaging},
|
| 15 |
+
volume={42},
|
| 16 |
+
number={3},
|
| 17 |
+
pages={697--712},
|
| 18 |
+
year={2022},
|
| 19 |
+
publisher={IEEE}
|
| 20 |
+
}
|
| 21 |
+
```
|
| 22 |
+
|
| 23 |
+
|
| 24 |
+
## Dataset description
|
| 25 |
+
The Learn2Reg challenge provides datasets, annotations, and open-source evaluation code for developing and benchmarking medical image registration methods. The Abdomen MR-CT task includes CT scans with organ labels to support multi-modal abdominal image registration research.
|
| 26 |
+
|
| 27 |
+
**Challenge homepage**: https://learn2reg.grand-challenge.org/learn2reg-2025/
|
| 28 |
+
|
| 29 |
+
**Number of CT volumes**: 16
|
| 30 |
+
|
| 31 |
+
**Contrast**: -
|
| 32 |
+
|
| 33 |
+
**CT body coverage**: Abdomen
|
| 34 |
+
|
| 35 |
+
**Does the dataset include any ground truth annotations?**: Yes
|
| 36 |
+
|
| 37 |
+
**Original GT annotation targets**: Liver, spleen, right kidney, left kidney
|
| 38 |
+
|
| 39 |
+
**Number of annotated CT volumes**: 8
|
| 40 |
+
|
| 41 |
+
**Annotator**: Human
|
| 42 |
+
|
| 43 |
+
**Acquisition centers**: -
|
| 44 |
+
|
| 45 |
+
**Pathology/Disease**: -
|
| 46 |
+
|
| 47 |
+
**Original dataset download link**: (Task "Abdomen MR-CT") https://learn2reg.grand-challenge.org/Datasets/
|
| 48 |
+
|
| 49 |
+
**Original dataset format**: nifti
|
| 50 |
+
|
| 51 |
+
## Note
|
| 52 |
+
This subset contains 16 TCIA images from the Abdomen MR-CT task (sources: TCGA-KIRC, TCGA-KIRP, TCGA-LIHC), corresponding to imagesTr/ and imagesTs/ cases AbdomenMRCT_0001_0001 to AbdomenMRCT_0016_0001. Our internal IDs (learn2reg_img000x_tcia) do not match the original 1–16 numbering.
|