Add link to new paper and code repository

#1
by nielsr HF Staff - opened
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  1. README.md +6 -6
README.md CHANGED
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  ---
 
 
 
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  tags:
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  - protein-protein interaction
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  - binding affinity
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  - bioinformatics
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  - multi-chain proteins
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  - ppb affinity
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- license: cc-by-nc-sa-4.0
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  pipeline_tag: regression
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- task_categories:
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- - text-classification
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  ---
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  ## Dataset Description
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  This version of the dataset was prepared for the study: "*[Beyond Simple Concatenation: Fairly Assessing PLM Architectures for Multi-Chain Protein-Protein Interactions Prediction](https://arxiv.org/pdf/2505.20036)*."
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  The primary enhancements in this repository include:
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  * Various levels of data filtration and processing.
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  * The addition of pre-extracted "Ligand Sequences" and "Receptor Sequences" columns, making the dataset ready for use with sequence-based models without requiring PDB file parsing. For complexes with multiple ligand or receptor chains, the sequences are comma-separated.
@@ -106,6 +108,4 @@ All configurations share a common set of columns. These include columns from the
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  * **`Ligand Sequences`**: `string` - Comma-separated amino acid sequences of the ligand chain(s).
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  * **`Receptor Sequences`**: `string` - Comma-separated amino acid sequences of the receptor chain(s).
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- **Note on Sequences**: When multiple ligand or receptor chains are present in a complex, their respective amino acid sequences are concatenated with a comma (`,`) as a separator in the "Ligand Sequences" and "Receptor Sequences" fields.
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-
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- ---
 
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  ---
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+ license: cc-by-nc-sa-4.0
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+ task_categories:
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+ - regression
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  tags:
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  - protein-protein interaction
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  - binding affinity
 
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  - bioinformatics
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  - multi-chain proteins
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  - ppb affinity
 
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  pipeline_tag: regression
 
 
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  ---
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  ## Dataset Description
 
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  This version of the dataset was prepared for the study: "*[Beyond Simple Concatenation: Fairly Assessing PLM Architectures for Multi-Chain Protein-Protein Interactions Prediction](https://arxiv.org/pdf/2505.20036)*."
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+ Code: https://github.com/Proteinea/ppiseq
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+
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  The primary enhancements in this repository include:
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  * Various levels of data filtration and processing.
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  * The addition of pre-extracted "Ligand Sequences" and "Receptor Sequences" columns, making the dataset ready for use with sequence-based models without requiring PDB file parsing. For complexes with multiple ligand or receptor chains, the sequences are comma-separated.
 
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  * **`Ligand Sequences`**: `string` - Comma-separated amino acid sequences of the ligand chain(s).
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  * **`Receptor Sequences`**: `string` - Comma-separated amino acid sequences of the receptor chain(s).
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+ **Note on Sequences**: When multiple ligand or receptor chains are present in a complex, their respective amino acid sequences are concatenated with a comma (`,`) as a separator in the "Ligand Sequences" and "Receptor Sequences" fields.