Shreshth Gandhi commited on
Commit
6f23458
·
1 Parent(s): c2d674f

Update README.md

Browse files
Files changed (2) hide show
  1. README.md +24 -126
  2. dataset_size_comparison.png +0 -0
README.md CHANGED
@@ -6,140 +6,38 @@ size_categories:
6
  - 10M<n<100M
7
  ---
8
 
9
- # Dataset Card for Dataset Name
10
 
11
- <!-- Provide a quick summary of the dataset. -->
 
 
 
 
12
 
13
- This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1).
 
14
 
15
- ## Dataset Details
 
16
 
17
- ### Dataset Description
18
 
19
- <!-- Provide a longer summary of what this dataset is. -->
20
 
 
21
 
22
 
23
- - **Curated by:** [More Information Needed]
24
- - **Funded by [optional]:** [More Information Needed]
25
- - **Shared by [optional]:** [More Information Needed]
26
- - **Language(s) (NLP):** [More Information Needed]
27
- - **License:** [More Information Needed]
28
 
29
- ### Dataset Sources [optional]
30
 
31
- <!-- Provide the basic links for the dataset. -->
32
 
33
- - **Repository:** [More Information Needed]
34
- - **Paper [optional]:** [More Information Needed]
35
- - **Demo [optional]:** [More Information Needed]
36
-
37
- ## Uses
38
-
39
- <!-- Address questions around how the dataset is intended to be used. -->
40
-
41
- ### Direct Use
42
-
43
- <!-- This section describes suitable use cases for the dataset. -->
44
-
45
- [More Information Needed]
46
-
47
- ### Out-of-Scope Use
48
-
49
- <!-- This section addresses misuse, malicious use, and uses that the dataset will not work well for. -->
50
-
51
- [More Information Needed]
52
-
53
- ## Dataset Structure
54
-
55
- <!-- This section provides a description of the dataset fields, and additional information about the dataset structure such as criteria used to create the splits, relationships between data points, etc. -->
56
-
57
- [More Information Needed]
58
-
59
- ## Dataset Creation
60
-
61
- ### Curation Rationale
62
-
63
- <!-- Motivation for the creation of this dataset. -->
64
-
65
- [More Information Needed]
66
-
67
- ### Source Data
68
-
69
- <!-- This section describes the source data (e.g. news text and headlines, social media posts, translated sentences, ...). -->
70
-
71
- #### Data Collection and Processing
72
-
73
- <!-- This section describes the data collection and processing process such as data selection criteria, filtering and normalization methods, tools and libraries used, etc. -->
74
-
75
- [More Information Needed]
76
-
77
- #### Who are the source data producers?
78
-
79
- <!-- This section describes the people or systems who originally created the data. It should also include self-reported demographic or identity information for the source data creators if this information is available. -->
80
-
81
- [More Information Needed]
82
-
83
- ### Annotations [optional]
84
-
85
- <!-- If the dataset contains annotations which are not part of the initial data collection, use this section to describe them. -->
86
-
87
- #### Annotation process
88
-
89
- <!-- This section describes the annotation process such as annotation tools used in the process, the amount of data annotated, annotation guidelines provided to the annotators, interannotator statistics, annotation validation, etc. -->
90
-
91
- [More Information Needed]
92
-
93
- #### Who are the annotators?
94
-
95
- <!-- This section describes the people or systems who created the annotations. -->
96
-
97
- [More Information Needed]
98
-
99
- #### Personal and Sensitive Information
100
-
101
- <!-- State whether the dataset contains data that might be considered personal, sensitive, or private (e.g., data that reveals addresses, uniquely identifiable names or aliases, racial or ethnic origins, sexual orientations, religious beliefs, political opinions, financial or health data, etc.). If efforts were made to anonymize the data, describe the anonymization process. -->
102
-
103
- [More Information Needed]
104
-
105
- ## Bias, Risks, and Limitations
106
-
107
- <!-- This section is meant to convey both technical and sociotechnical limitations. -->
108
-
109
- [More Information Needed]
110
-
111
- ### Recommendations
112
-
113
- <!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
114
-
115
- Users should be made aware of the risks, biases and limitations of the dataset. More information needed for further recommendations.
116
-
117
- ## Citation [optional]
118
-
119
- <!-- If there is a paper or blog post introducing the dataset, the APA and Bibtex information for that should go in this section. -->
120
-
121
- **BibTeX:**
122
-
123
- [More Information Needed]
124
-
125
- **APA:**
126
-
127
- [More Information Needed]
128
-
129
- ## Glossary [optional]
130
-
131
- <!-- If relevant, include terms and calculations in this section that can help readers understand the dataset or dataset card. -->
132
-
133
- [More Information Needed]
134
-
135
- ## More Information [optional]
136
-
137
- [More Information Needed]
138
-
139
- ## Dataset Card Authors [optional]
140
-
141
- [More Information Needed]
142
-
143
- ## Dataset Card Contact
144
-
145
- [More Information Needed]
 
6
  - 10M<n<100M
7
  ---
8
 
9
+ # Tahoe-100M
10
 
11
+ Tahoe-100M is a giga-scale single-cell perturbation atlas consisting of over 100 million transcriptomic profiles from
12
+ 50 cancer cell lines exposed to 1,100 small-molecule perturbations. Generated using Vevo Therapeutics'
13
+ Mosaic high-throughput platform, Tahoe-100M enables deep, context-aware exploration of gene function, cellular states, and drug responses at unprecedented scale and resolution.
14
+ This dataset is designed to power the development of next-generation AI models of cell biology,
15
+ offering broad applications across systems biology, drug discovery, and precision medicine.
16
 
17
+ ![img](dataset_size_comparison.png)
18
+ ## Dataset Description
19
 
20
+ ### Features
21
+ The dataset has the following fields:
22
 
 
23
 
24
+ ### Additional metadata
25
 
26
+ ### How to use
27
 
28
 
 
 
 
 
 
29
 
 
30
 
 
31
 
32
+ ## Citation
33
+ Please cite:
34
+ ```
35
+ @article{zhang2025tahoe,
36
+ title={Tahoe-100M: A Giga-Scale Single-Cell Perturbation Atlas for Context-Dependent Gene Function and Cellular Modeling},
37
+ author={Zhang, Jesse and Ubas, Airol A and de Borja, Richard and Svensson, Valentine and Thomas, Nicole and Thakar, Neha and Lai, Ian and Winters, Aidan and Khan, Umair and Jones, Matthew G and others},
38
+ journal={bioRxiv},
39
+ pages={2025--02},
40
+ year={2025},
41
+ publisher={Cold Spring Harbor Laboratory}
42
+ }
43
+ ```
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
dataset_size_comparison.png ADDED