This repository contains notebooks used for pipeline development, training, and evaluation for MatchMiner-AI. Not all code will run out of the box, since some notebooks depend on an institutional dataset that cannot be shared because it contains protected health information (PHI). A Zip file containing shareable synthetic datasets is provided.
To run full pipeline inference on your own notes using the models trained on synthetic data, refer to notebook run_on_your_notes_and_trials.ipynb. That notebook will require slight edits to pull your input notes and may need edits to work with your own GPU setup (if any).
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