Hugging Face's logo

BigScience Biomedical Datasets
non-profit
Activity Feed Request to join this org

AI & ML interests

We aim to unify the schema across many different biomedical NLP resources.

Recent Activity

WojciechKusa  authored a paper 7 days ago
PL-Guard: Benchmarking Language Model Safety for Polish
jfries  updated a dataset 11 days ago
bigbio/chemprot
jfries  new activity 12 days ago
bigbio/chemprot:Convert dataset to Parquet
View all activity

Nymbo 
posted an update about 6 hours ago
view post
Post
75
Anyone know how to reset Claude web's MCP config? I connected mine when the HF MCP first released with just the default example spaces added. I added lots of other MCP spaces but Claude.ai doesn't update the available tools... "Disconnecting" the HF integration does nothing, deleting it and adding it again does nothing.

Refreshing tools works fine in VS Code because I can manually restart it in mcp.json, but claude.ai has no such option. Anyone got any ideas?
prithivMLmods 
posted an update about 13 hours ago
view post
Post
793
The demo for Camel-Doc-OCR-062825 (exp) is optimized for document retrieval and direct Markdown (.md) generation from images and PDFs. Additional demos include OCRFlux-3B (document OCR), VilaSR (spatial reasoning with visual drawing), and ShotVL (cinematic language understanding). 🐪

✦ Space : prithivMLmods/Doc-VLMs-v2-Localization

Models :
⤷ camel-doc-ocr-062825 : prithivMLmods/Camel-Doc-OCR-062825
⤷ ocrflux-3b : ChatDOC/OCRFlux-3B
⤷ vilasr : AntResearchNLP/ViLaSR
⤷ shotvl : Vchitect/ShotVL-7B

⤷ Multimodal Implementations : prithivMLmods/multimodal-implementations-67c9982ea04b39f0608badb0

The community GPU grant was given by Hugging Face — special thanks to them. This space supports the following tasks: (image inference, video inference) with result markdown canvas and object detection/localization. 🤗🚀

.
.
.
To know more about it, visit the model card of the respective model. !!
prithivMLmods 
posted an update 6 days ago
view post
Post
1886
The demo for DREX-062225-exp (Document Retrieval and Extraction eXpert ~ experimental) / typhoon-ocr-3b (a bilingual document parsing model built specifically for real-world documents) / VIREX-062225-exp (Video Information Retrieval and Extraction eXpert ~ experimental) / olmOCR-7B-0225-preview (the document parsing model based on Qwen2VL). 🤗

✦ Demo : prithivMLmods/Doc-VLMs-OCR ~ ( with .md canvas )

⤷ DREX-062225-exp : prithivMLmods/DREX-062225-exp
⤷ typhoon-ocr-3b : scb10x/typhoon-ocr-3b
⤷ VIREX-062225-exp : prithivMLmods/VIREX-062225-exp
⤷ olmOCR-7B-0225-preview : allenai/olmOCR-7B-0225-preview

⤷ Collection : prithivMLmods/doc-vl-685839064a863e1cd23be3f1
⤷ Multimodal Implementations : prithivMLmods/multimodal-implementations-67c9982ea04b39f0608badb0
.
.
.

To know more about it, visit the model card of the respective model. !!
·
albertvillanova 
posted an update 6 days ago
view post
Post
1428
🚀 SmolAgents v1.19.0 is live!
This release brings major improvements to agent flexibility, UI usability, streaming architecture, and developer experience: making it easier than ever to build smart, interactive AI agents. Here's what's new:

🔧 Agent Upgrades
- Support for managed agents in ToolCallingAgent
- Context manager support for cleaner agent lifecycle handling
- Output formatting now uses XML tags for consistency

🖥️ UI Enhancements
- GradioUI now supports reset_agent_memory: perfect for fresh starts in dev & demos.

🔄 Streaming Refactor
- Streaming event aggregation moved off the Model class
- ➡️ Better architecture & maintainability

📦 Output Tracking
- CodeAgent outputs are now stored in ActionStep
- ✅ More visibility and structure to agent decisions

🐛 Bug Fixes
- Smarter planning logic
- Cleaner Docker logs
- Better prompt formatting for additional_args
- Safer internal functions and final answer matching

📚 Docs Improvements
- Added quickstart examples with tool usage
- One-click Colab launch buttons
- Expanded reference docs (AgentMemory, GradioUI docstrings)
- Fixed broken links and migrated to .md format

🔗 Full release notes:
https://github.com/huggingface/smolagents/releases/tag/v1.19.0

💬 Try it out, explore the new features, and let us know what you build!

#smolagents #opensource #AIagents #LLM #HuggingFace
WojciechKusa 
authored a paper 7 days ago
prithivMLmods 
posted an update 7 days ago
view post
Post
2626
Updated the docscopeOCR-7B-050425-exp with the DREX-062225-exp, with improved preciseness in table structure and line spacing in the markdown used on the document page. And though this is still an experimental one, it's expected to perform well in the defined DREX use cases [ Document Retrieval and Extraction eXpert – experimental ocr ]. 💻

⤷ Model : prithivMLmods/DREX-062225-exp
⤷ Demo : prithivMLmods/Doc-VLMs-OCR

⤷ Collection : prithivMLmods/doc-vl-685839064a863e1cd23be3f1
⤷ Multimodal Implementations : prithivMLmods/multimodal-implementations-67c9982ea04b39f0608badb0
⤷ Git : https://github.com/PRITHIVSAKTHIUR/DREX.git
.
.
.

To know more about it, visit the model card of the respective model. !!
prithivMLmods 
posted an update 11 days ago
view post
Post
1827
The demo for smoldocling / nanonets ocr / typhoon ocr / monkey ocr explores the document OCR capabilities of various newly released multimodal VLMs in a single space. And if you're experiencing or demoing long document image OCR, kindly use the Smoldocling 256M preview [ Smoldocling is back in demo here. ] 🤗.

✦ Try the demo here : prithivMLmods/Multimodal-OCR2

⤷ MonkeyOCR Recognition : echo840/MonkeyOCR
⤷ Nanonets-OCR-s : nanonets/Nanonets-OCR-s
⤷ SmolDocling-256M-preview : ds4sd/SmolDocling-256M-preview
⤷ typhoon-ocr-7b : scb10x/typhoon-ocr-7b

⤷ Multimodal Implementations : prithivMLmods/multimodal-implementations-67c9982ea04b39f0608badb0

⤷ Github : https://github.com/PRITHIVSAKTHIUR/Multimodal-OCR2


The community GPU grant was given by Hugging Face — special thanks to them. 🤗🚀



To know more about it, visit the model card of the respective model. !!
  • 2 replies
·
jfries 
updated a dataset 11 days ago
jfries 
in bigbio/chemprot 12 days ago

Convert dataset to Parquet
#4 opened 12 days ago by
jfries

link in readme is broken

1
#3 opened 25 days ago by
tmills
prithivMLmods 
posted an update 13 days ago
view post
Post
3757
The demo for the MonkeyOCR Recognition model, which adopts a Structure-Recognition-Relation (SRR) triplet paradigm & Nanonets-OCR-s a powerful, state-of-the-art image-to-markdown OCR model that goes far beyond traditional text extraction and other experimental document OCR models, is combined into a single space.

✦ Try the demo here : prithivMLmods/core-OCR
✦ Try Nanonets-OCR-s demo here : prithivMLmods/Multimodal-OCR

⤷ MonkeyOCR Recognition : echo840/MonkeyOCR
⤷ docscopeOCR-7B-050425-exp : prithivMLmods/docscopeOCR-7B-050425-exp
⤷ coreOCR-7B-050325-preview : prithivMLmods/coreOCR-7B-050325-preview
⤷ Nanonets-OCR-s : nanonets/Nanonets-OCR-s

⤷ Multimodal Implementations : prithivMLmods/multimodal-implementations-67c9982ea04b39f0608badb0

Also, include a sample OCR test using the VisionOCR-3B-061125 model and the Qwen2-VL-OCR-2B-Instruct model.
⤷ Blog : https://huggingface.co/blog/prithivMLmods/visionocr-3b-061125-vs-qwen2-vl-ocr-2b-instruct

To know more about it, visit the model card of the respective model. !!
WojciechKusa 
authored 4 papers 20 days ago
Tonic 
posted an update 26 days ago
view post
Post
592
🙋🏻‍♂️ hey there folks ,

So every bio/med/chem meeting i go to i always the same questions "why are you sharing a gdrive link with me for this?" and "Do you have any plans to publish your model weights and datasets on huggingface?" and finally i got a good answer today which explains everything :

basically there is some kind of government censorship on this (usa, but i'm sure others too) and they are told they are not allowed as it is considered a "dataleak" which is illegal !!!!

this is terrible ! but the good news is that we can do something about it !

so there is this "call for opinions and comments" here from the NIH (usa) , and here we can make our opinion on this topic known : https://osp.od.nih.gov/comment-form-responsibly-developing-and-sharing-generative-artificial-intelligence-tools-using-nih-controlled-access-data/

kindly consider dropping your opinion and thoughts about this censorship of science , and share this post , link or thoughts widely .

Together maybe we can start to share data and model weights appropriately and openly in a good way 🙏🏻🚀

cc. @cyrilzakka

prithivMLmods 
posted an update about 1 month ago
view post
Post
5689
OpenAI, Google, Hugging Face, and Anthropic have released guides and courses on building agents, prompting techniques, scaling AI use cases, and more. Below are 10+ minimalistic guides and courses that may help you in your progress. 📖

⤷ Agents Companion : https://www.kaggle.com/whitepaper-agent-companion
⤷ Building Effective Agents : https://www.anthropic.com/engineering/building-effective-agents
⤷ Guide to building agents by OpenAI : https://cdn.openai.com/business-guides-and-resources/a-practical-guide-to-building-agents.pdf
⤷ Prompt engineering by Google : https://www.kaggle.com/whitepaper-prompt-engineering
⤷ Google: 601 real-world gen AI use cases : https://cloud.google.com/transform/101-real-world-generative-ai-use-cases-from-industry-leaders
⤷ Prompt engineering by IBM : https://www.ibm.com/think/topics/prompt-engineering-guide
⤷ Prompt Engineering by Anthropic : https://docs.anthropic.com/en/docs/build-with-claude/prompt-engineering/overview
⤷ Scaling AI use cases : https://cdn.openai.com/business-guides-and-resources/identifying-and-scaling-ai-use-cases.pdf
⤷ Prompting Guide 101 : https://services.google.com/fh/files/misc/gemini-for-google-workspace-prompting-guide-101.pdf
⤷ AI in the Enterprise by OpenAI : https://cdn.openai.com/business-guides-and-resources/ai-in-the-enterprise.pdf

by HF🤗 :
⤷ AI Agents Course by Huggingface : https://huggingface.co/learn/agents-course/unit0/introduction
⤷ Smol-agents Docs : https://huggingface.co/docs/smolagents/en/tutorials/building_good_agents
⤷ MCP Course by Huggingface : https://huggingface.co/learn/mcp-course/unit0/introduction
⤷ Other Course (LLM, Computer Vision, Deep RL, Audio, Diffusion, Cookbooks, etc..) : https://huggingface.co/learn
  • 2 replies
·
prithivMLmods 
posted an update about 1 month ago
view post
Post
2301
Just made a demo for Cosmos-Reason1, a physical AI model that understands physical common sense and generates appropriate embodied decisions in natural language through long chain-of-thought reasoning. Also added video understanding support to it. 🤗🚀

✦ Try the demo here : prithivMLmods/DocScope-R1

⤷ Cosmos-Reason1-7B : nvidia/Cosmos-Reason1-7B
⤷ docscopeOCR-7B-050425-exp : prithivMLmods/docscopeOCR-7B-050425-exp
⤷ Captioner-Relaxed : Ertugrul/Qwen2.5-VL-7B-Captioner-Relaxed

⤷ Multimodal Implementations : prithivMLmods/multimodal-implementations-67c9982ea04b39f0608badb0

⤷ GitHub :
• https://github.com/PRITHIVSAKTHIUR/Cosmos-x-DocScope
• https://github.com/PRITHIVSAKTHIUR/Nvidia-Cosmos-Reason1-Demo.

To know more about it, visit the model card of the respective model. !!
AtAndDev 
posted an update about 1 month ago
view post
Post
2796
deepseek-ai/DeepSeek-R1-0528

This is the end
  • 1 reply
·
albertvillanova 
posted an update about 1 month ago