Tabula Sapiens
Collection
105 items
•
Updated
Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models for plug-in use in your own analysis. Follow our tutorial to learn how to use the model for cell type annotation.
Model description
Tabula Sapiens is a benchmark, first-draft human cell atlas of over 1.1M cells from 28 organs of 24 normal human subjects. This work is the product of the Tabula Sapiens Consortium. Taking the organs from the same individual controls for genetic background, age, environment, and epigenetic effects, and allows detailed analysis and comparison of cell types that are shared between tissues.
Link to CELLxGENE: Link to the data in the CELLxGENE browser for interactive exploration of the data and download of the source data.
Training Code URL: Not provided by uploader.
Metrics
We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are computed on a 10% random subset of the data that was not used for training.
| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
|---|---|---|---|---|---|---|---|---|---|---|
| basal cell | 3375 | 0.86 | 0.80 | 0.88 | 0.73 | 0.00 | 0.68 | 0.87 | 0.86 | 0.93 |
| bladder urothelial cell | 2721 | 0.99 | 0.91 | 0.91 | 0.66 | 0.00 | 0.55 | 1.00 | 0.99 | 0.99 |
| luminal epithelial cell of mammary gland | 1512 | 0.99 | 0.18 | 0.97 | 0.67 | 0.00 | 0.60 | 0.99 | 0.98 | 1.00 |
| enterocyte of epithelium proper of duodenum | 1378 | 0.92 | 0.62 | 0.80 | 0.47 | 0.00 | 0.27 | 0.91 | 0.91 | 0.94 |
| stratified squamous epithelial cell | 1184 | 0.82 | 0.81 | 0.90 | 0.79 | 0.00 | 0.67 | 0.84 | 0.84 | 0.89 |
| acinar cell of salivary gland | 1178 | 0.94 | 0.85 | 0.90 | 0.62 | 0.00 | 0.38 | 0.96 | 0.95 | 0.97 |
| pulmonary alveolar type 2 cell | 1183 | 0.95 | 0.97 | 0.96 | 0.77 | 0.00 | 0.64 | 0.97 | 0.96 | 0.97 |
| conjunctival epithelial cell | 1136 | 0.88 | 0.75 | 0.82 | 0.48 | 0.00 | 0.10 | 0.95 | 0.92 | 0.94 |
| luminal cell of prostate epithelium | 1088 | 0.93 | 0.80 | 0.92 | 0.72 | 0.00 | 0.47 | 0.96 | 0.94 | 0.96 |
| kidney epithelial cell | 939 | 0.99 | 0.81 | 0.92 | 0.51 | 0.00 | 0.22 | 1.00 | 1.00 | 1.00 |
| hepatocyte | 739 | 1.00 | 1.00 | 0.97 | 0.64 | 0.00 | 0.33 | 1.00 | 1.00 | 1.00 |
| enterocyte of epithelium proper of ileum | 678 | 0.98 | 0.26 | 0.83 | 0.35 | 0.00 | 0.06 | 0.98 | 0.98 | 0.98 |
| pancreatic acinar cell | 530 | 0.93 | 0.67 | 0.94 | 0.59 | 0.00 | 0.19 | 0.98 | 0.97 | 0.97 |
| enterocyte of epithelium of large intestine | 475 | 0.81 | 0.38 | 0.56 | 0.41 | 0.00 | 0.04 | 0.82 | 0.87 | 0.83 |
| corneal epithelial cell | 422 | 0.92 | 0.00 | 0.94 | 0.71 | 0.00 | 0.60 | 0.96 | 0.95 | 0.97 |
| duct epithelial cell | 370 | 0.80 | 0.58 | 0.79 | 0.45 | 0.00 | 0.43 | 0.83 | 0.80 | 0.86 |
| basal cell of prostate epithelium | 325 | 0.74 | 0.02 | 0.86 | 0.41 | 0.00 | 0.24 | 0.89 | 0.82 | 0.87 |
| pulmonary alveolar type 1 cell | 296 | 0.97 | 0.96 | 0.96 | 0.81 | 0.00 | 0.86 | 0.97 | 0.96 | 0.98 |
| pancreatic ductal cell | 263 | 0.89 | 0.14 | 0.87 | 0.64 | 0.00 | 0.56 | 0.94 | 0.94 | 0.95 |
| small intestine goblet cell | 202 | 0.89 | 0.77 | 0.91 | 0.71 | 0.00 | 0.63 | 0.92 | 0.91 | 0.93 |
| paneth cell of epithelium of small intestine | 187 | 0.67 | 0.57 | 0.70 | 0.31 | 0.00 | 0.32 | 0.68 | 0.74 | 0.79 |
| club cell | 189 | 0.72 | 0.77 | 0.83 | 0.56 | 0.00 | 0.64 | 0.79 | 0.77 | 0.86 |
| intestinal crypt stem cell of colon | 170 | 0.78 | 0.53 | 0.69 | 0.46 | 0.00 | 0.10 | 0.78 | 0.80 | 0.85 |
| progenitor cell of mammary luminal epithelium | 182 | 0.99 | 0.00 | 0.98 | 0.98 | 0.00 | 0.96 | 0.96 | 0.95 | 0.99 |
| epithelial cell | 158 | 0.98 | 0.91 | 0.87 | 0.38 | 0.00 | 0.21 | 0.99 | 0.97 | 0.97 |
| large intestine goblet cell | 149 | 0.86 | 0.66 | 0.75 | 0.52 | 0.00 | 0.51 | 0.93 | 0.87 | 0.91 |
| enterocyte of epithelium proper of small intestine | 148 | 0.41 | 0.00 | 0.24 | 0.17 | 0.00 | 0.32 | 0.71 | 0.73 | 0.70 |
| epithelial cell of uterus | 141 | 0.96 | 0.47 | 0.79 | 0.37 | 0.00 | 0.25 | 0.99 | 0.95 | 0.98 |
| acinar cell | 140 | 0.86 | 0.56 | 0.52 | 0.68 | 0.00 | 0.68 | 0.93 | 0.92 | 0.94 |
| lung ciliated cell | 111 | 0.77 | 0.58 | 0.81 | 0.79 | 0.00 | 0.75 | 0.95 | 0.96 | 0.94 |
| respiratory goblet cell | 109 | 0.60 | 0.49 | 0.74 | 0.47 | 0.00 | 0.37 | 0.66 | 0.70 | 0.78 |
| salivary gland cell | 79 | 0.70 | 0.10 | 0.89 | 0.46 | 0.00 | 0.60 | 0.80 | 0.71 | 0.89 |
| ciliated columnar cell of tracheobronchial tree | 60 | 0.00 | 0.38 | 0.74 | 0.71 | 0.00 | 0.41 | 0.94 | 0.90 | 0.92 |
| intrahepatic cholangiocyte | 55 | 0.99 | 0.20 | 0.72 | 0.40 | 0.00 | 0.40 | 1.00 | 0.95 | 0.95 |
| blood vessel smooth muscle cell | 65 | 0.99 | 0.73 | 0.91 | 0.82 | 0.00 | 0.75 | 0.99 | 0.98 | 0.99 |
| intestinal crypt stem cell of small intestine | 43 | 0.00 | 0.21 | 0.33 | 0.16 | 0.00 | 0.18 | 0.35 | 0.36 | 0.40 |
| myoepithelial cell | 40 | 0.65 | 0.33 | 0.84 | 0.57 | 0.00 | 0.63 | 0.58 | 0.48 | 0.83 |
| intestinal tuft cell | 38 | 0.75 | 0.80 | 0.92 | 0.71 | 0.00 | 0.76 | 0.99 | 0.96 | 0.87 |
| enterocyte of epithelium proper of jejunum | 49 | 0.00 | 0.00 | 0.35 | 0.14 | 0.00 | 0.05 | 0.53 | 0.46 | 0.56 |
| serous cell of epithelium of trachea | 27 | 0.31 | 0.00 | 0.19 | 0.36 | 0.00 | 0.26 | 0.45 | 0.43 | 0.75 |
| mesothelial cell | 31 | 0.95 | 0.79 | 0.63 | 0.82 | 0.00 | 0.54 | 0.98 | 0.94 | 0.98 |
| ciliated epithelial cell | 27 | 0.91 | 0.00 | 0.46 | 0.72 | 0.00 | 0.57 | 1.00 | 0.93 | 0.93 |
| mucus secreting cell | 33 | 0.65 | 0.14 | 0.68 | 0.28 | 0.00 | 0.45 | 0.62 | 0.77 | 0.81 |
| supporting cell of vestibular epithelium | 27 | 0.90 | 0.00 | 0.71 | 0.78 | 0.00 | 0.54 | 1.00 | 0.96 | 0.98 |
| enteroendocrine cell of small intestine | 32 | 0.52 | 0.47 | 0.79 | 0.56 | 0.00 | 0.65 | 0.83 | 0.74 | 0.79 |
| transit amplifying cell of colon | 20 | 0.35 | 0.22 | 0.29 | 0.25 | 0.00 | 0.21 | 0.48 | 0.54 | 0.65 |
| ovarian surface epithelial cell | 14 | 0.90 | 0.12 | 0.67 | 0.56 | 0.00 | 0.31 | 1.00 | 0.86 | 0.96 |
| tracheal goblet cell | 24 | 0.00 | 0.19 | 0.65 | 0.59 | 0.00 | 0.41 | 0.81 | 0.63 | 0.79 |
| paneth cell of colon | 17 | 0.00 | 0.10 | 0.58 | 0.43 | 0.00 | 0.32 | 0.76 | 0.30 | 0.67 |
| glandular epithelial cell | 14 | 0.75 | 0.17 | 0.32 | 0.61 | 0.00 | 0.14 | 0.93 | 0.71 | 0.88 |
| tuft cell of colon | 19 | 0.00 | 0.09 | 0.76 | 0.27 | 0.00 | 0.61 | 0.88 | 0.92 | 0.67 |
| ionocyte | 10 | 0.80 | 0.53 | 0.67 | 0.67 | 0.00 | 0.50 | 0.83 | 0.71 | 0.86 |
| neuro-medullary thymic epithelial cell | 9 | 0.48 | 0.32 | 0.76 | 0.57 | 0.00 | 0.50 | 0.75 | 0.69 | 0.59 |
| sebum secreting cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| type B pancreatic cell | 15 | 0.00 | 0.00 | 0.90 | 0.82 | 0.00 | 0.54 | 0.97 | 0.88 | 0.97 |
| myo-medullary thymic epithelial cell | 4 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.05 | 1.00 | 1.00 | 1.00 |
| interstitial cell of Cajal | 7 | 0.00 | 0.00 | 0.92 | 0.62 | 0.00 | 0.31 | 0.93 | 0.92 | 1.00 |
| retinal pigment epithelial cell | 9 | 1.00 | 0.88 | 0.80 | 1.00 | 0.00 | 0.78 | 1.00 | 1.00 | 1.00 |
| peritubular myoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| pancreatic A cell | 10 | 0.00 | 0.00 | 0.90 | 0.43 | 0.00 | 0.80 | 1.00 | 0.89 | 1.00 |
| vestibular dark cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.11 | 1.00 | 0.80 | 0.86 |
| type L enteroendocrine cell | 8 | 0.00 | 0.00 | 0.71 | 0.20 | 0.00 | 0.71 | 1.00 | 0.86 | 0.77 |
| medullary thymic epithelial cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.89 | 0.75 | 0.67 |
| transit amplifying cell of small intestine | 4 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.08 | 0.00 | 0.00 | 0.00 |
| taste receptor cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 0.00 | 0.22 | 0.40 |
| enterochromaffin-like cell | 5 | 0.00 | 0.00 | 0.57 | 0.20 | 0.00 | 0.60 | 0.75 | 0.80 | 0.57 |
| pulmonary ionocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| enteroendocrine cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| serous cell of epithelium of bronchus | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.06 | 1.00 | 1.00 | 1.00 |
| pancreatic D cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| keratocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| pancreatic PP cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| epithelial fate stem cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
The train accuracies are computed on the training data.
| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
|---|---|---|---|---|---|---|---|---|---|---|
| basal cell | 30141 | 0.86 | 0.75 | 0.94 | 0.83 | 0.00 | 0.85 | 0.87 | 0.86 | 0.94 |
| bladder urothelial cell | 24511 | 0.99 | 0.88 | 0.94 | 0.79 | 0.00 | 0.97 | 1.00 | 0.99 | 1.00 |
| luminal epithelial cell of mammary gland | 13912 | 0.99 | 0.00 | 0.98 | 0.82 | 0.00 | 0.99 | 0.99 | 0.98 | 1.00 |
| enterocyte of epithelium proper of duodenum | 12117 | 0.92 | 0.08 | 0.88 | 0.70 | 0.00 | 0.94 | 0.92 | 0.92 | 0.97 |
| stratified squamous epithelial cell | 11133 | 0.83 | 0.78 | 0.93 | 0.86 | 0.00 | 0.82 | 0.85 | 0.84 | 0.90 |
| acinar cell of salivary gland | 11058 | 0.95 | 0.70 | 0.94 | 0.79 | 0.00 | 0.96 | 0.96 | 0.96 | 0.98 |
| pulmonary alveolar type 2 cell | 10411 | 0.96 | 0.96 | 0.98 | 0.83 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |
| conjunctival epithelial cell | 9930 | 0.89 | 0.58 | 0.89 | 0.68 | 0.00 | 0.95 | 0.95 | 0.93 | 0.97 |
| luminal cell of prostate epithelium | 9564 | 0.92 | 0.39 | 0.96 | 0.81 | 0.00 | 0.96 | 0.96 | 0.94 | 0.97 |
| kidney epithelial cell | 8326 | 0.99 | 0.03 | 0.96 | 0.78 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
| hepatocyte | 6672 | 1.00 | 0.99 | 0.98 | 0.86 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
| enterocyte of epithelium proper of ileum | 5799 | 0.98 | 0.05 | 0.89 | 0.61 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |
| pancreatic acinar cell | 4952 | 0.94 | 0.07 | 0.97 | 0.79 | 0.00 | 0.98 | 0.99 | 0.97 | 0.99 |
| enterocyte of epithelium of large intestine | 4092 | 0.78 | 0.27 | 0.79 | 0.62 | 0.00 | 0.87 | 0.84 | 0.88 | 0.86 |
| corneal epithelial cell | 3758 | 0.92 | 0.00 | 0.95 | 0.81 | 0.00 | 0.93 | 0.96 | 0.94 | 0.96 |
| duct epithelial cell | 3519 | 0.80 | 0.44 | 0.90 | 0.72 | 0.00 | 0.87 | 0.85 | 0.84 | 0.91 |
| basal cell of prostate epithelium | 3170 | 0.77 | 0.00 | 0.94 | 0.71 | 0.00 | 0.86 | 0.87 | 0.83 | 0.92 |
| pulmonary alveolar type 1 cell | 2820 | 0.97 | 0.95 | 0.98 | 0.88 | 0.00 | 0.94 | 0.98 | 0.96 | 0.98 |
| pancreatic ductal cell | 2456 | 0.90 | 0.03 | 0.94 | 0.80 | 0.00 | 0.96 | 0.97 | 0.95 | 0.97 |
| small intestine goblet cell | 1842 | 0.89 | 0.49 | 0.94 | 0.81 | 0.00 | 0.91 | 0.94 | 0.93 | 0.96 |
| paneth cell of epithelium of small intestine | 1666 | 0.65 | 0.36 | 0.80 | 0.56 | 0.00 | 0.68 | 0.76 | 0.77 | 0.85 |
| club cell | 1558 | 0.72 | 0.74 | 0.92 | 0.69 | 0.00 | 0.86 | 0.82 | 0.79 | 0.91 |
| intestinal crypt stem cell of colon | 1562 | 0.79 | 0.27 | 0.83 | 0.63 | 0.00 | 0.85 | 0.86 | 0.88 | 0.92 |
| progenitor cell of mammary luminal epithelium | 1512 | 0.98 | 0.00 | 0.99 | 0.98 | 0.00 | 0.95 | 0.95 | 0.94 | 0.99 |
| epithelial cell | 1476 | 0.95 | 0.41 | 0.82 | 0.61 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |
| large intestine goblet cell | 1408 | 0.87 | 0.18 | 0.84 | 0.69 | 0.00 | 0.91 | 0.95 | 0.91 | 0.94 |
| enterocyte of epithelium proper of small intestine | 1267 | 0.42 | 0.00 | 0.74 | 0.43 | 0.00 | 0.85 | 0.74 | 0.78 | 0.87 |
| epithelial cell of uterus | 1274 | 0.98 | 0.12 | 0.90 | 0.55 | 0.00 | 0.94 | 0.99 | 0.96 | 0.99 |
| acinar cell | 1202 | 0.82 | 0.17 | 0.80 | 0.80 | 0.00 | 0.93 | 0.95 | 0.94 | 0.96 |
| lung ciliated cell | 1098 | 0.76 | 0.07 | 0.92 | 0.90 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |
| respiratory goblet cell | 931 | 0.64 | 0.42 | 0.89 | 0.70 | 0.00 | 0.74 | 0.66 | 0.67 | 0.88 |
| salivary gland cell | 771 | 0.69 | 0.02 | 0.95 | 0.78 | 0.00 | 0.90 | 0.81 | 0.78 | 0.94 |
| ciliated columnar cell of tracheobronchial tree | 653 | 0.00 | 0.18 | 0.85 | 0.86 | 0.00 | 0.83 | 0.96 | 0.92 | 0.98 |
| intrahepatic cholangiocyte | 602 | 0.97 | 0.16 | 0.97 | 0.65 | 0.00 | 0.91 | 0.99 | 0.96 | 0.99 |
| blood vessel smooth muscle cell | 588 | 0.98 | 0.33 | 0.95 | 0.86 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
| intestinal crypt stem cell of small intestine | 544 | 0.01 | 0.13 | 0.48 | 0.30 | 0.00 | 0.39 | 0.60 | 0.62 | 0.71 |
| myoepithelial cell | 446 | 0.77 | 0.14 | 0.94 | 0.84 | 0.00 | 0.75 | 0.71 | 0.57 | 0.92 |
| intestinal tuft cell | 410 | 0.77 | 0.82 | 0.97 | 0.86 | 0.00 | 0.95 | 0.99 | 0.98 | 0.96 |
| enterocyte of epithelium proper of jejunum | 356 | 0.00 | 0.00 | 0.66 | 0.31 | 0.00 | 0.95 | 0.57 | 0.51 | 0.95 |
| serous cell of epithelium of trachea | 299 | 0.44 | 0.00 | 0.88 | 0.63 | 0.00 | 0.49 | 0.55 | 0.62 | 0.80 |
| mesothelial cell | 294 | 0.89 | 0.67 | 0.86 | 0.82 | 0.00 | 0.82 | 0.97 | 0.97 | 0.96 |
| ciliated epithelial cell | 293 | 0.95 | 0.00 | 0.79 | 0.78 | 0.00 | 0.87 | 0.99 | 0.98 | 0.99 |
| mucus secreting cell | 237 | 0.58 | 0.04 | 0.88 | 0.69 | 0.00 | 0.78 | 0.69 | 0.78 | 0.88 |
| supporting cell of vestibular epithelium | 240 | 0.87 | 0.00 | 0.69 | 0.82 | 0.00 | 0.95 | 1.00 | 0.97 | 1.00 |
| enteroendocrine cell of small intestine | 232 | 0.59 | 0.55 | 0.92 | 0.79 | 0.00 | 0.81 | 0.95 | 0.90 | 0.91 |
| transit amplifying cell of colon | 217 | 0.41 | 0.15 | 0.59 | 0.54 | 0.00 | 0.58 | 0.68 | 0.73 | 0.85 |
| ovarian surface epithelial cell | 216 | 0.90 | 0.06 | 0.85 | 0.73 | 0.00 | 0.90 | 1.00 | 0.97 | 0.99 |
| tracheal goblet cell | 203 | 0.00 | 0.17 | 0.90 | 0.71 | 0.00 | 0.73 | 0.86 | 0.71 | 0.92 |
| paneth cell of colon | 200 | 0.00 | 0.14 | 0.74 | 0.64 | 0.00 | 0.68 | 0.77 | 0.44 | 0.90 |
| glandular epithelial cell | 201 | 0.84 | 0.05 | 0.77 | 0.64 | 0.00 | 0.74 | 0.99 | 0.89 | 0.99 |
| tuft cell of colon | 159 | 0.00 | 0.03 | 0.94 | 0.64 | 0.00 | 0.96 | 0.98 | 0.93 | 0.97 |
| ionocyte | 150 | 0.71 | 0.34 | 0.83 | 0.73 | 0.00 | 0.72 | 0.87 | 0.83 | 0.88 |
| neuro-medullary thymic epithelial cell | 115 | 0.49 | 0.04 | 0.90 | 0.81 | 0.00 | 0.79 | 0.94 | 0.92 | 0.91 |
| sebum secreting cell | 106 | 0.76 | 0.00 | 0.91 | 0.34 | 0.00 | 0.84 | 0.97 | 0.83 | 0.97 |
| type B pancreatic cell | 87 | 0.00 | 0.00 | 0.93 | 0.91 | 0.00 | 0.80 | 1.00 | 1.00 | 0.99 |
| myo-medullary thymic epithelial cell | 73 | 0.00 | 0.00 | 0.95 | 0.87 | 0.00 | 0.67 | 1.00 | 0.99 | 0.99 |
| interstitial cell of Cajal | 63 | 0.00 | 0.00 | 1.00 | 0.88 | 0.00 | 0.71 | 0.98 | 0.99 | 1.00 |
| retinal pigment epithelial cell | 58 | 0.98 | 0.03 | 1.00 | 0.94 | 0.00 | 0.95 | 0.99 | 0.99 | 1.00 |
| peritubular myoid cell | 61 | 0.00 | 0.00 | 0.74 | 0.60 | 0.00 | 0.98 | 0.99 | 0.91 | 0.97 |
| pancreatic A cell | 38 | 0.00 | 0.00 | 0.96 | 0.88 | 0.00 | 0.88 | 1.00 | 1.00 | 1.00 |
| vestibular dark cell | 41 | 0.00 | 0.00 | 0.70 | 0.27 | 0.00 | 0.20 | 1.00 | 0.88 | 0.97 |
| type L enteroendocrine cell | 36 | 0.00 | 0.00 | 0.83 | 0.44 | 0.00 | 0.83 | 0.99 | 0.96 | 0.94 |
| medullary thymic epithelial cell | 31 | 0.00 | 0.00 | 0.85 | 0.40 | 0.00 | 0.43 | 0.91 | 0.87 | 0.98 |
| transit amplifying cell of small intestine | 30 | 0.00 | 0.00 | 0.45 | 0.06 | 0.00 | 0.28 | 0.75 | 0.83 | 0.91 |
| taste receptor cell | 28 | 0.00 | 0.00 | 0.53 | 0.63 | 0.00 | 0.36 | 0.81 | 0.47 | 0.89 |
| enterochromaffin-like cell | 22 | 0.00 | 0.00 | 0.84 | 0.67 | 0.00 | 0.86 | 0.98 | 1.00 | 0.98 |
| pulmonary ionocyte | 24 | 0.00 | 0.00 | 0.89 | 0.59 | 0.00 | 0.51 | 1.00 | 0.81 | 0.98 |
| enteroendocrine cell | 24 | 0.00 | 0.00 | 0.88 | 0.73 | 0.00 | 0.62 | 0.92 | 0.94 | 0.92 |
| serous cell of epithelium of bronchus | 14 | 0.00 | 0.00 | 0.73 | 0.53 | 0.00 | 0.42 | 0.97 | 1.00 | 0.92 |
| pancreatic D cell | 8 | 0.00 | 0.00 | 0.57 | 0.86 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
| keratocyte | 7 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.54 | 0.82 | 0.33 | 0.44 |
| pancreatic PP cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.67 |
| epithelial fate stem cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.14 | 0.50 | 1.00 | 0.00 |
References
Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues, The Tabula Sapiens Consortium; bioRxiv, doi: https://doi.org/10.1101/2024.12.03.626516
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