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ctheodoris
/
Geneformer

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Safetensors
bert
single-cell
genomics
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Geneformer
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  • 18 contributors
History: 87 commits
ricomnl's picture
ricomnl
Added anndata tokenizer and switched to Dataset.from_generator
b6ca566 about 2 years ago
  • examples
    Added anndata tokenizer and switched to Dataset.from_generator about 2 years ago
  • fine_tuned_models
    Add fine-tuned CellClassifier for cardiomyopathy about 2 years ago
  • geneformer-12L-30M
    Upload 12 layer Geneformer model about 2 years ago
  • geneformer
    Added anndata tokenizer and switched to Dataset.from_generator about 2 years ago
  • .gitattributes
    1.24 kB
    Add gene name : Ensembl ID dictionary about 2 years ago
  • .gitignore
    3.08 kB
    Add gitignore file about 2 years ago
  • MANIFEST.in
    127 Bytes
    Fixes to stats and adding gene dict attempt number 2 (#13) about 2 years ago
  • README.md
    6.19 kB
    Update README.md about 2 years ago
  • config.json
    565 Bytes
    upload Geneformer 6L-30M config over 3 years ago
  • pytorch_model.bin

    Detected Pickle imports (4)

    • "torch.LongStorage",
    • "collections.OrderedDict",
    • "torch.FloatStorage",
    • "torch._utils._rebuild_tensor_v2"

    What is a pickle import?

    41.2 MB
    xet
    upload Geneformer 6L-30M over 3 years ago
  • setup.py
    637 Bytes
    Add setup.py almost 3 years ago
  • training_args.bin

    Detected Pickle imports (4)

    • "transformers.training_args.TrainingArguments",
    • "transformers.trainer_utils.SchedulerType",
    • "torch.device",
    • "transformers.trainer_utils.IntervalStrategy"

    How to fix it?

    2.61 kB
    xet
    upload training args for Geneformer 6L-30M over 3 years ago