ctheodoris
/

Geneformer

Model card Files Files and versions

44.5 MB

19 contributors

History: 45 commits

Christina Theodoris

Update instructions in tokenizing example to clarify requirement for Ensembl ID

e606e1c over 2 years ago

examples
Update instructions in tokenizing example to clarify requirement for Ensembl ID over 2 years ago
geneformer
Add further explanation to tokenizer example script and updated tokenizer to match loompy raised error over 2 years ago
.gitattributes

1.24 kB

Add gene name : Ensembl ID dictionary over 2 years ago
.gitignore

3.08 kB

Add gitignore file over 2 years ago
MANIFEST.in

127 Bytes

Fixes to stats and adding gene dict attempt number 2 (#13) over 2 years ago
README.md

4.74 kB

Update model card with information about fine-tuning over 2 years ago
config.json

565 Bytes

upload Geneformer 6L-30M config over 3 years ago
pytorch_model.bin
Detected Pickle imports (4)
- "torch._utils._rebuild_tensor_v2",
- "torch.LongStorage",
- "torch.FloatStorage",
- "collections.OrderedDict"
What is a pickle import?
41.2 MB
xet

upload Geneformer 6L-30M over 3 years ago
setup.py

637 Bytes

Add setup.py about 3 years ago
training_args.bin
Detected Pickle imports (4)
- "transformers.trainer_utils.IntervalStrategy",
- "torch.device",
- "transformers.training_args.TrainingArguments",
- "transformers.trainer_utils.SchedulerType"
How to fix it?
2.61 kB
xet

upload training args for Geneformer 6L-30M over 3 years ago