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--- |
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license: mit |
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language: |
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- en |
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tags: |
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- OntoLearner |
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- ontology-learning |
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- chemistry |
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pretty_name: Agricultural |
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--- |
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<div> |
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<img src="https://raw.githubusercontent.com/sciknoworg/OntoLearner/main/images/logo.png" alt="OntoLearner" |
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style="display: block; margin: 0 auto; width: 500px; height: auto;"> |
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<h1 style="text-align: center; margin-top: 1em;">Chemistry Domain Ontologies</h1> |
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</div> |
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## Overview |
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The domain of chemistry ontologies encompasses the structured representation and formalization of chemical knowledge, including entities, reactions, processes, and methodologies. It plays a critical role in facilitating interoperability, data integration, and advanced computational modeling across diverse chemical disciplines. By providing a standardized framework, these ontologies enhance the precision and efficiency of information exchange and support the advancement of research and innovation in the chemical sciences. |
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## Ontologies |
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| Ontology ID | Full Name | Classes | Properties | Last Updated | |
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|-------------|-----------|---------|------------|--------------| |
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| AFO | Allotrope Foundation Ontology (AFO) | 3871 | 318 | 2024-06-28| |
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| ChEBI | Chemical Entities of Biological Interest (ChEBI) | 220816 | 10 | 01/01/2025| |
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| CHEMINF | Chemical Information Ontology (CHEMINF) | 358 | 52 | None| |
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| CHIRO | CHEBI Integrated Role Ontology (CHIRO) | 13930 | 15 | 2015-11-23| |
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| ChMO | Chemical Methods Ontology (ChMO) | 3202 | 27 | 2022-04-19| |
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| FIX | FIX Ontology (FIX) | 1163 | 5 | 2020-04-13| |
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| MassSpectrometry | Mass Spectrometry Ontology (MassSpectrometry) | 3636 | 12 | 12:02:2025| |
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| MOP | Molecular Process Ontology (MOP) | 3717 | 11 | 2022-05-11| |
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| NMRCV | Nuclear Magnetic Resonance Controlled Vocabulary (NMRCV) | 757 | 0 | 2017-10-19| |
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| OntoKin | Chemical Kinetics Ontology (OntoKin) | 83 | 136 | 08 February 2022| |
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| PROCO | PROcess Chemistry Ontology (PROCO) | 970 | 61 | 04-14-2022| |
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| PSIMOD | Proteomics Standards Initiative (PSI) Protein Modifications Ontology (PSI-MOD) | 2098 | 4 | 2022-06-13| |
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| REX | Physico-chemical process ontology (REX) | 552 | 6 | 2025-03-11| |
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| RXNO | Reaction Ontology (RXNO) | 1109 | 14 | 2021-12-16| |
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| VIBSO | Vibrational Spectroscopy Ontology (VIBSO) | 598 | 53 | 2024-09-23| |
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## Dataset Files |
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Each ontology directory contains the following files: |
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1. `<ontology_id>.<format>` - The original ontology file |
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2. `term_typings.json` - Dataset of term to type mappings |
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3. `taxonomies.json` - Dataset of taxonomic relations |
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4. `non_taxonomic_relations.json` - Dataset of non-taxonomic relations |
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5. `<ontology_id>.rst` - Documentation describing the ontology |
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## Usage |
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These datasets are intended for ontology learning research and applications. |
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